Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022041.1 Corchorus olitorius cultivar O-4 contig22074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30574

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3185--3333
54
2.8
53
75
16
130
50
7
19
22
1.72
3290--3415
42
2.8
44
81
8
148
54
6
20
18
1.65
3277--3874
47
12.4
47
78
10
580
49
7
20
23
1.73
3246--3874
101
6.5
96
78
12
535
49
7
20
22
1.73
3332--3874
148
3.7
148
89
2
831
49
7
20
22
1.73
3332--3874
195
2.8
189
81
9
619
49
7
20
22
1.73
3870--3986
22
5.4
20
76
18
110
57
7
22
12
1.61
3884--3985
44
2.3
43
88
5
143
58
6
22
11
1.56
5160--5194
10
3.5
10
96
0
61
31
34
8
25
1.86
6051--6380
178
1.9
178
87
3
486
34
16
14
34
1.88
6048--6425
178
2.1
177
82
5
458
36
15
14
34
1.87
6962--7003
2
21.5
2
90
4
68
50
0
0
50
1.00
7287--8189
436
2.1
436
83
5
1117
43
12
14
29
1.81
11034--11091
26
2.1
27
90
6
91
41
3
6
48
1.47
12197--12268
22
3.0
24
80
8
67
25
5
2
66
1.27
12365--12461
31
3.2
31
83
2
99
37
12
18
31
1.88
12414--12480
29
2.4
27
87
9
91
37
5
22
34
1.79
13350--13387
16
2.4
16
86
8
51
21
15
44
18
1.86
13787--13879
48
1.9
48
91
0
150
21
25
8
44
1.81
13802--13876
23
3.2
22
70
14
60
18
25
8
48
1.75
14847--14982
48
2.8
48
96
0
245
19
22
10
47
1.79
14871--14954
25
3.4
25
72
6
91
20
20
13
46
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19483--19547
28
2.4
28
82
7
71
35
26
15
23
1.94
20333--20475
65
2.2
65
96
0
259
24
22
10
42
1.85
21331--21423
48
1.9
48
95
0
168
22
24
8
44
1.81
21343--21414
23
3.0
23
69
15
74
19
25
8
47
1.77
22427--22501
22
3.3
22
66
10
60
20
25
8
46
1.77
22413--22504
47
1.9
47
86
2
130
22
26
8
42
1.82
24585--24668
25
3.4
25
73
12
93
21
22
11
44
1.85
24575--24700
48
2.6
48
100
0
252
20
23
9
46
1.79
30090--30131
20
2.1
20
100
0
84
23
21
9
45
1.81

Tables:   1

The End!