Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022045.1 Corchorus olitorius cultivar O-4 contig22078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49486

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
535--578
23
1.9
23
90
9
72
70
0
25
4
1.06
548--593
19
2.5
19
85
3
67
69
0
23
6
1.11
548--590
18
2.4
18
88
7
61
69
0
25
4
1.07
1043--1167
57
2.2
58
94
4
227
44
17
11
26
1.82
8470--8514
13
3.4
14
85
14
53
2
55
0
42
1.12
8479--8509
16
1.9
16
100
0
62
0
58
0
41
0.98
14952--14984
1
33.0
1
93
0
57
0
3
0
96
0.20
16441--16479
13
2.9
13
84
3
51
33
5
0
61
1.18
19055--19138
40
2.2
38
93
4
141
17
14
29
38
1.90
20174--20460
152
1.9
150
89
4
443
32
9
4
52
1.54
20175--20499
152
2.2
152
86
5
410
31
9
5
53
1.56
20727--20768
16
2.7
15
82
13
50
23
7
30
38
1.82
21965--22042
29
2.7
29
77
2
93
15
8
32
43
1.78
32924--32969
19
2.5
19
83
13
60
76
4
2
17
1.06
33066--33101
18
2.0
18
100
0
72
44
0
11
44
1.39
36106--36145
19
2.2
18
86
4
53
30
20
5
45
1.72

Tables:   1

The End!