Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022046.1 Corchorus olitorius cultivar O-4 contig22079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2067
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34


Found at i:1894 original size:21 final size:20

Alignment explanation


    Indices: 1853--1901  Score: 62
    Period size: 21  Copynumber: 2.4  Consensus size: 20

       1843 GATTATGTAA

                           **   
       1853 ATGCAAAATGTGAAATTAAT
          1 ATGCAAAATGTGAAACAAAT

                          *      
       1873 ATGCGAAAATGTGATACAAAT
          1 ATGC-AAAATGTGAAACAAAT

                    
       1894 ATGCAAAA
          1 ATGCAAAA

       1902 GAACACAACA


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  20    8  0.32
  21   17  0.68

ACGTcount: A:0.51, C:0.08, G:0.16, T:0.24


Consensus pattern (20 bp):   
ATGCAAAATGTGAAACAAAT
Done.