Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022047.1 Corchorus olitorius cultivar O-4 contig22080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7592

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
251--299
21
2.4
20
83
6
62
51
8
16
24
1.71
390--496
27
3.9
28
78
10
114
38
24
19
17
1.93
2188--2250
16
3.9
16
79
6
65
44
38
9
7
1.66
2180--2252
33
2.3
32
85
4
94
42
36
12
8
1.72
4106--4172
21
3.2
21
64
16
57
50
14
5
28
1.66
4093--4173
42
1.9
42
97
0
153
46
16
7
29
1.73
4239--4407
56
3.0
56
96
0
311
39
1
23
35
1.63
5619--5675
16
3.6
16
77
13
55
42
35
14
8
1.76
5619--5675
15
3.6
15
80
17
62
42
35
14
8
1.76
6789--6867
30
2.6
30
85
0
104
39
12
15
32
1.85
7340--7390
25
2.0
25
100
0
102
39
33
3
23
1.73

Tables:   1

The End!