Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022048.1 Corchorus olitorius cultivar O-4 contig22081, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4637
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.35


Found at i:3757 original size:23 final size:23

Alignment explanation


    Indices: 3730--3775  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3720 AAATAAGCCT

                                   
       3730 TCTCTATCCCAAAGAAAATGGAA
          1 TCTCTATCCCAAAGAAAATGGAA

                                   
       3753 TCTCTATCCCAAAGAAAATGGAA
          1 TCTCTATCCCAAAGAAAATGGAA

       3776 AGATGGAATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.43, C:0.22, G:0.13, T:0.22


Consensus pattern (23 bp):   
TCTCTATCCCAAAGAAAATGGAA
Done.