Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022049.1 Corchorus olitorius cultivar O-4 contig22082, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6914
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34


Found at i:6384 original size:22 final size:22

Alignment explanation


    Indices: 6359--6435  Score: 84
    Period size: 22  Copynumber: 3.5  Consensus size: 22

       6349 TATTTTTATG

                                 *
       6359 AAATTTTGATAACTATCCTATT
          1 AAATTTTGATAACTATCCTATA

                         *   *   *
       6381 AAATTTTGATAACCATCATATG
          1 AAATTTTGATAACTATCCTATA

                      * *         
       6403 AAATTTTGATGATTA-CCTATA
          1 AAATTTTGATAACTATCCTATA

                 *      
       6424 AAATTGTGATAA
          1 AAATTTTGATAA

       6436 ACTCCATAAG


Statistics
Matches: 45,  Mismatches: 10, Indels: 1
        0.80            0.18        0.02

Matches are distributed among these distances:
  21   14  0.31
  22   31  0.69

ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40


Consensus pattern (22 bp):   
AAATTTTGATAACTATCCTATA
Done.