Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022050.1 Corchorus olitorius cultivar O-4 contig22083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59556

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2726--2986
137
1.9
136
96
0
477
45
5
12
37
1.65
3033--3066
2
16.5
2
87
6
50
47
2
0
50
1.16
5882--6049
22
7.8
21
74
7
106
38
8
14
38
1.76
6108--6132
2
12.5
2
100
0
50
48
0
0
52
1.00
6861--6887
12
2.2
12
100
0
54
44
33
7
14
1.73
8037--8068
6
5.7
6
89
10
50
56
0
9
34
1.32
8037--8068
11
2.8
12
90
9
50
56
0
9
34
1.32
23619--23913
41
7.0
43
72
9
230
38
24
11
25
1.89
23621--23913
85
3.5
84
85
2
374
38
24
11
25
1.89
26938--27007
26
2.7
26
74
12
72
31
0
5
62
1.18
33400--33456
28
2.0
28
96
0
105
7
19
47
26
1.74
40296--40334
11
3.5
11
83
16
53
51
7
0
41
1.31
40294--40350
13
4.3
13
77
16
55
50
8
0
40
1.33
42616--42668
11
4.8
11
82
17
58
81
1
0
16
0.79
45987--46107
22
5.5
22
69
12
70
32
15
9
42
1.78
46000--46041
21
2.0
22
95
4
77
28
14
7
50
1.69
46190--46258
22
3.1
22
79
8
77
37
14
10
37
1.80
46247--46326
23
3.5
23
91
3
126
38
15
6
40
1.72
46203--46327
23
5.6
22
83
8
121
36
16
8
39
1.77
46355--46487
22
6.2
20
69
17
79
34
16
9
39
1.82
46366--46486
44
2.8
44
76
20
121
34
15
9
39
1.81
46569--46839
22
12.4
22
69
12
139
33
14
9
41
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46593--46740
66
2.2
66
80
2
154
34
13
10
41
1.78
46657--46977
22
14.4
22
70
16
114
36
16
9
38
1.81
46860--47243
66
5.6
65
71
12
243
38
17
8
35
1.81
46849--47242
44
9.1
44
68
15
155
37
18
8
35
1.81
46679--47005
180
1.8
179
80
6
392
35
17
9
37
1.82
47024--47244
22
10.0
22
76
10
128
39
16
8
35
1.80
47059--47153
46
2.1
44
78
7
102
38
17
8
34
1.80
48394--48453
31
1.9
31
86
0
84
38
16
5
40
1.71
55990--56018
10
3.0
10
95
5
51
72
0
0
27
0.85

Tables:   1

The End!