Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022054.1 Corchorus olitorius cultivar O-4 contig22087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107467

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
537--584
2
23.5
2
95
4
87
50
47
0
2
1.12
584--619
2
18.5
2
94
5
65
52
0
0
47
1.00
729--1058
43
7.8
42
78
12
343
21
11
25
41
1.86
726--1058
84
3.9
84
91
0
504
21
11
25
41
1.86
1800--1831
16
2.0
16
100
0
64
31
12
25
31
1.92
5253--5277
12
2.1
12
100
0
50
52
16
0
32
1.44
5744--5894
22
6.9
22
70
11
96
35
11
15
37
1.84
5797--5895
22
4.5
22
80
9
103
37
14
14
34
1.86
5741--5976
66
3.5
66
79
7
201
35
9
17
37
1.83
5922--5972
22
2.3
23
76
10
61
31
3
21
43
1.71
5932--5974
22
2.0
22
90
0
68
32
6
18
41
1.77
6308--6368
31
2.0
30
84
6
79
16
14
9
59
1.61
7110--7170
31
2.0
30
90
6
97
13
14
9
62
1.55
21403--21509
23
4.9
22
80
7
110
42
7
14
35
1.75
21509--21583
22
3.4
22
78
10
82
44
8
9
38
1.66
28970--29113
72
2.0
72
97
0
270
24
21
20
33
1.97
29893--29925
17
1.9
17
100
0
66
48
27
6
18
1.71
33101--33222
31
3.9
31
83
0
145
15
21
27
36
1.93
33101--33217
62
1.9
62
85
0
162
15
21
26
36
1.93
40076--40376
166
1.8
167
93
1
525
37
7
3
52
1.46
41183--41243
31
2.0
31
93
0
104
29
24
8
37
1.84
41280--41449
93
1.8
93
94
2
306
31
13
1
53
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41286--41476
93
2.1
93
87
2
276
33
12
2
51
1.54
42378--42410
17
1.9
17
88
11
50
54
0
6
39
1.25
44606--44869
113
2.5
102
77
14
288
40
7
9
41
1.67
49950--50039
46
1.9
47
93
2
155
38
22
17
21
1.93
63856--64228
124
3.0
124
90
0
620
37
7
19
34
1.81
66418--66453
13
2.8
13
100
0
72
41
33
0
25
1.55
67013--67048
12
2.8
13
91
8
65
36
13
25
25
1.93
68231--68256
10
2.6
10
100
0
52
30
7
23
38
1.83
71970--72011
22
1.9
22
85
0
57
38
26
21
14
1.91
72897--73088
105
1.9
102
87
3
285
53
1
10
34
1.46
73873--73905
16
2.1
16
94
0
57
39
6
3
51
1.42
75438--75463
8
3.2
8
100
0
52
76
0
0
23
0.78
77108--77142
3
11.7
3
100
0
70
31
0
0
68
0.90
81683--81721
21
1.9
20
89
5
60
30
20
5
43
1.73
84893--84930
13
2.9
13
96
0
67
21
26
7
44
1.79
86698--86753
28
2.0
28
82
10
69
41
7
8
42
1.63
86714--86779
29
2.3
28
81
2
69
33
12
7
46
1.69
86814--86841
14
2.0
14
100
0
56
21
7
0
71
1.09
101430--101454
12
2.1
12
100
0
50
92
8
0
0
0.40

Tables:   1

The End!