Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022055.1 Corchorus olitorius cultivar O-4 contig22088, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10254
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:9 original size:2 final size:2

Alignment explanation


    Indices: 3--36  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

          1 CT

                                                              
          3 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

         37 ATTCAAGTTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:7179 original size:13 final size:13

Alignment explanation


    Indices: 7157--7186  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       7147 TAATTATTAA

                 *       
       7157 GAGAGTCAAATTG
          1 GAGAGACAAATTG

                         
       7170 GAGAGACAAATTG
          1 GAGAGACAAATTG

                
       7183 GAGA
          1 GAGA

       7187 AAAAAAAAAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.43, C:0.07, G:0.33, T:0.17


Consensus pattern (13 bp):   
GAGAGACAAATTG

Found at i:9058 original size:2 final size:2

Alignment explanation


    Indices: 9051--9087  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       9041 ACCAATTGTG

                                                                   
       9051 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       9088 CAACTGGTTC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.