Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022056.1 Corchorus olitorius cultivar O-4 contig22089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10351
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37


Found at i:1347 original size:17 final size:17

Alignment explanation


    Indices: 1327--1361  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1317 GCTACCAATA

                             
       1327 CGTATTAAAAACCAACT
          1 CGTATTAAAAACCAACT

                             
       1344 CGTATTAAAAACCAACT
          1 CGTATTAAAAACCAACT

             
       1361 C
          1 C

       1362 TCCATATAGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.46, C:0.26, G:0.06, T:0.23


Consensus pattern (17 bp):   
CGTATTAAAAACCAACT

Found at i:3792 original size:21 final size:21

Alignment explanation


    Indices: 3774--3828  Score: 94
    Period size: 20  Copynumber: 2.7  Consensus size: 21

       3764 GGTTGCTAAA

                                 
       3774 TACCGCCCCCTTTTTGCTAGT
          1 TACCGCCCCCTTTTTGCTAGT

              *                  
       3795 TATCG-CCCCTTTTTGCTAGT
          1 TACCGCCCCCTTTTTGCTAGT

                          
       3815 TACCGCCCCCTTTT
          1 TACCGCCCCCTTTT

       3829 GACGCTTTTG


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  20   19  0.61
  21   12  0.39

ACGTcount: A:0.09, C:0.38, G:0.13, T:0.40


Consensus pattern (21 bp):   
TACCGCCCCCTTTTTGCTAGT

Done.