genome.fa.s22057.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022057.1 Corchorus olitorius cultivar O-4 contig22090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53553

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4140--4178	13	3.1	13	85	7	62	51	7	10	30	1.64
4138--4177	12	3.2	12	86	6	62	50	7	10	32	1.64
6821--6896	38	2.0	38	100	0	152	34	15	13	36	1.87
8685--8784	46	2.2	46	85	7	132	36	11	22	31	1.89
16665--16689	12	2.1	12	100	0	50	8	24	8	60	1.52
18156--18367	22	9.5	21	73	10	147	36	10	16	36	1.83
18154--18493	66	5.3	66	71	14	215	36	9	18	36	1.82
18156--19447	44	29.9	44	66	16	394	38	9	16	35	1.81
18372--18785	22	18.7	21	70	13	156	39	9	16	35	1.80
18267--18489	122	1.8	122	82	9	292	36	8	18	35	1.82
18977--19136	82	1.9	84	83	2	207	42	6	16	34	1.74
18825--19453	22	29.1	22	66	14	175	39	9	16	35	1.80
19415--19462	22	2.2	22	81	7	53	50	10	14	25	1.74
19624--19704	28	2.7	29	81	9	83	29	13	9	46	1.75
23438--23542	22	4.7	22	77	10	97	40	14	10	34	1.80
23611--23771	44	3.7	43	78	10	155	34	13	11	41	1.79
23567--23768	22	9.0	23	71	15	115	34	14	9	42	1.78
23846--23895	22	2.3	22	89	3	75	44	14	10	32	1.78
23854--23898	22	2.1	22	95	4	83	40	13	6	40	1.71
25578--25632	20	2.8	20	75	2	58	32	9	18	40	1.82
25628--25683	22	2.5	22	78	16	62	41	16	10	32	1.82
25668--25796	22	5.8	22	76	6	118	39	8	13	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25668--25796	43	2.9	46	79	10	142	39	8	13	37	1.76
25804--25828	13	1.9	13	100	0	50	72	4	8	16	1.24
27948--27972	8	3.1	8	100	0	50	0	0	36	64	0.94
35075--35280	104	2.0	105	96	0	378	39	21	15	23	1.91
38363--38553	83	2.3	83	98	0	364	36	20	13	29	1.91
52458--52495	18	2.1	18	85	9	51	10	7	15	65	1.45
52506--52535	14	2.1	15	93	6	53	13	13	6	66	1.43

Tables:   1

The End!