Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022058.1 Corchorus olitorius cultivar O-4 contig22091, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4831
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:773 original size:17 final size:17

Alignment explanation


    Indices: 747--779  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        737 AGATTGCGTT

                             
        747 TTTATTTTTCT-TTTTC
          1 TTTATTTTTCTATTTTC

                             
        763 TTTATTTTTTCTATTTT
          1 TTTA-TTTTTCTATTTT

        780 AATTTGCACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    4  0.27
  17    7  0.47
  18    4  0.27

ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC
Done.