Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022059.1 Corchorus olitorius cultivar O-4 contig22092, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2455
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26


Found at i:1754 original size:16 final size:16

Alignment explanation


    Indices: 1717--1756  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       1707 AGAGATTGAC

                 *          
       1717 AGAAAGCAATTAAACT
          1 AGAAAACAATTAAACT

                            
       1733 -GAAAACAATTAAACT
          1 AGAAAACAATTAAACT

                     
       1748 AGAAAACAA
          1 AGAAAACAA

       1757 AGCAAAGTAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  15   14  0.64
  16    8  0.36

ACGTcount: A:0.62, C:0.12, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT
Done.