Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002206.1 Corchorus olitorius cultivar O-4 contig02206, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:871 original size:22 final size:22

Alignment explanation


    Indices: 843--886  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        833 ATGAATCGGC

                                  
        843 ACTCTATTAAGGTTTGTGTTCA
          1 ACTCTATTAAGGTTTGTGTTCA

                                  
        865 ACTCTATTAAGGTTTGTGTTCA
          1 ACTCTATTAAGGTTTGTGTTCA

        887 GTCGATCTTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45


Consensus pattern (22 bp):   
ACTCTATTAAGGTTTGTGTTCA

Found at i:1034 original size:21 final size:21

Alignment explanation


    Indices: 1010--1053  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1000 TCAACCAGAG

                                 
       1010 AGTGAAACCCATTTCCACTAA
          1 AGTGAAACCCATTTCCACTAA

                                 
       1031 AGTGAAACCCATTTCCACTAA
          1 AGTGAAACCCATTTCCACTAA

              
       1052 AG
          1 AG

       1054 ACGGGTGACT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23


Consensus pattern (21 bp):   
AGTGAAACCCATTTCCACTAA
Done.