Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022063.1 Corchorus olitorius cultivar O-4 contig22096, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11916
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:7434 original size:19 final size:19

Alignment explanation


    Indices: 7384--7434  Score: 61
    Period size: 19  Copynumber: 2.7  Consensus size: 19

       7374 TGTGGGATTT

                               
       7384 TTAATAA-TAATTATTCAA
          1 TTAATAATTAATTATTCAA

              *              *  
       7402 TAAAATAATT-ATTATTTAA
          1 T-TAATAATTAATTATTCAA

                          
       7421 TTAATAATTAATTA
          1 TTAATAATTAATTA

       7435 ATTTCAGCCC


Statistics
Matches: 27,  Mismatches: 3, Indels: 5
        0.77            0.09        0.14

Matches are distributed among these distances:
  18    8  0.30
  19   18  0.67
  20    1  0.04

ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47


Consensus pattern (19 bp):   
TTAATAATTAATTATTCAA

Found at i:7806 original size:13 final size:13

Alignment explanation


    Indices: 7788--7812  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       7778 AAGGCAACAA

                         
       7788 CAAAAATCATCAC
          1 CAAAAATCATCAC

                        
       7801 CAAAAATCATCA
          1 CAAAAATCATCA

       7813 TTCATGCCAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16


Consensus pattern (13 bp):   
CAAAAATCATCAC
Done.