Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022065.1 Corchorus olitorius cultivar O-4 contig22098, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6577
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:3961 original size:49 final size:49

Alignment explanation


    Indices: 3906--4004  Score: 180
    Period size: 49  Copynumber: 2.0  Consensus size: 49

       3896 AAGTCCGTTT

                        *                                    
       3906 GCTCATTTGGGATTTGCTTTTGGGCTTTGAGACTTGGAAAGCCCAAATA
          1 GCTCATTTGGGAGTTGCTTTTGGGCTTTGAGACTTGGAAAGCCCAAATA

                                         *                   
       3955 GCTCATTTGGGAGTTGCTTTTGGGCTTTGGGACTTGGAAAGCCCAAATA
          1 GCTCATTTGGGAGTTGCTTTTGGGCTTTGAGACTTGGAAAGCCCAAATA

             
       4004 G
          1 G

       4005 AGGCATGCAC


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  49   48  1.00

ACGTcount: A:0.21, C:0.16, G:0.29, T:0.33


Consensus pattern (49 bp):   
GCTCATTTGGGAGTTGCTTTTGGGCTTTGAGACTTGGAAAGCCCAAATA
Done.