Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022070.1 Corchorus olitorius cultivar O-4 contig22103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59545

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2119--2208
29
3.1
29
100
0
180
48
26
7
16
1.73
2182--2270
46
1.9
46
97
0
169
38
29
7
24
1.84
2190--2290
46
2.2
45
82
7
114
44
28
8
17
1.79
2436--2528
42
2.2
42
88
1
132
35
31
11
21
1.90
14293--14327
11
3.4
11
84
15
56
54
8
0
37
1.31
15841--15926
32
2.7
32
85
3
102
18
36
33
11
1.87
18676--18730
26
2.1
26
100
0
110
18
34
25
21
1.96
20036--20104
22
3.4
21
71
20
65
47
8
4
39
1.54
20095--20141
25
1.9
25
91
4
78
31
6
6
55
1.51
22506--22613
58
1.9
56
88
3
162
33
19
14
32
1.92
23771--23799
13
2.1
14
93
6
51
3
13
0
82
0.79
25197--25361
41
4.0
41
95
1
287
31
20
18
29
1.96
31211--31239
14
2.1
14
100
0
58
51
6
13
27
1.66
32012--32039
14
2.0
14
100
0
56
21
21
21
35
1.96
36902--36963
30
2.1
30
93
0
106
25
22
4
46
1.71
45736--45796
29
2.1
30
87
3
88
50
3
3
42
1.34
45897--45946
26
2.0
26
84
11
68
48
0
0
52
1.00
49173--49262
45
2.1
42
87
8
128
40
23
5
31
1.77
57607--57834
116
2.0
111
84
5
296
18
14
22
43
1.87

Tables:   1

The End!