Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022071.1 Corchorus olitorius cultivar O-4 contig22104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112135

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
618--655
11
3.5
11
85
10
51
57
2
0
39
1.12
27482--27510
12
2.4
12
100
0
58
24
37
6
31
1.82
29749--29805
28
2.0
28
100
0
114
28
17
3
50
1.62
40408--40455
24
2.0
24
92
8
80
6
27
8
58
1.51
41537--41579
1
43.0
1
80
0
50
90
2
6
0
0.52
45142--45215
30
2.3
32
90
9
116
39
14
24
21
1.91
50791--50834
21
2.1
21
86
0
61
18
6
56
18
1.62
53238--53262
13
1.9
13
100
0
50
16
0
32
52
1.44
61631--61657
3
9.0
3
100
0
54
33
0
0
66
0.92
64532--64589
29
2.0
29
86
0
80
58
5
17
18
1.56
64651--64692
21
2.0
21
100
0
84
42
23
0
33
1.55
80129--80501
22
16.9
22
71
11
235
35
9
16
37
1.83
94984--95020
18
2.1
18
100
0
74
48
21
0
29
1.50
96748--96966
109
2.0
109
100
0
438
31
22
15
31
1.95
102804--102842
19
2.1
18
86
13
53
69
10
5
15
1.34
103062--103107
24
1.9
24
81
0
56
26
19
34
19
1.96
103530--103786
125
2.0
127
90
7
405
37
10
1
49
1.47
105547--105582
15
2.4
15
95
0
63
50
0
0
50
1.00
107181--108684
326
4.6
327
75
9
1193
32
13
15
37
1.87
110298--110433
66
2.1
66
94
4
240
41
34
3
20
1.70
110786--110927
49
3.0
47
81
9
160
50
4
16
28
1.65
111766--111790
9
2.8
9
100
0
50
28
0
0
72
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112005--112083
3
26.3
3
97
0
140
32
2
0
64
1.07

Tables:   1

The End!