Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022073.1 Corchorus olitorius cultivar O-4 contig22106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87746

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
582--647
34
1.9
34
93
0
114
51
3
12
33
1.54
2391--2501
55
2.0
55
100
0
222
36
31
12
19
1.90
2969--3017
25
2.0
25
95
0
89
14
32
18
34
1.91
5265--5318
26
2.0
27
89
3
83
22
16
11
50
1.77
6053--6095
21
2.1
20
86
4
59
34
13
27
23
1.93
6329--6368
21
1.9
21
94
0
71
25
32
12
30
1.92
25988--26041
19
2.6
21
77
19
60
38
3
18
38
1.69
28642--28862
80
2.7
81
76
6
223
47
19
3
30
1.65
34625--34873
113
2.3
105
80
8
273
33
12
8
44
1.73
35928--35989
26
2.7
21
71
21
61
33
3
17
45
1.65
37444--37505
26
2.7
21
73
21
70
32
3
19
45
1.66
38411--38475
26
2.9
21
72
27
69
29
4
20
46
1.70
39663--39700
20
1.9
20
89
10
60
34
2
13
50
1.55
45463--45629
49
3.5
48
84
8
218
23
22
13
41
1.88
45465--45656
49
4.1
45
83
9
151
22
21
14
41
1.89
47756--47818
33
1.9
33
90
0
99
50
14
25
9
1.72
52095--52139
23
2.0
23
86
0
63
62
24
4
8
1.43
52140--52200
30
2.0
30
93
0
104
39
18
11
31
1.86
55182--55218
2
20.0
2
84
15
53
51
0
0
48
1.00
55179--55218
11
3.8
11
83
12
57
50
0
0
50
1.00
55182--55219
20
1.9
20
94
0
67
52
0
0
47
1.00
55174--55218
22
2.0
22
87
8
65
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55215--55269
11
5.0
11
82
8
60
50
20
10
18
1.76
56109--56151
19
2.2
20
87
4
61
27
2
11
58
1.46
62564--62615
23
2.3
23
100
0
104
38
9
30
21
1.85
62928--62970
22
2.0
22
95
0
77
23
34
23
18
1.96
63644--63672
12
2.5
12
94
5
51
79
0
0
20
0.74
66331--66968
53
11.9
54
80
7
655
31
22
18
26
1.97
66331--66971
268
2.4
267
82
6
739
32
22
18
26
1.97
66941--67322
35
10.9
35
92
0
613
37
21
14
26
1.92
67308--67422
54
2.1
54
96
0
212
32
20
15
32
1.94
67486--67536
22
2.3
21
80
9
57
13
31
5
49
1.66
75934--75961
2
14.0
2
100
0
56
50
0
0
50
1.00
77709--77752
23
1.9
23
85
0
61
79
4
11
4
1.02
76786--78056
637
2.0
636
95
1
2271
37
19
17
25
1.93
87147--87246
29
3.5
28
82
4
128
17
16
24
43
1.88

Tables:   1

The End!