Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022076.1 Corchorus olitorius cultivar O-4 contig22109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74505

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
266--420
77
2.0
79
86
7
219
40
26
21
12
1.88
16910--16978
33
2.1
33
83
5
86
52
18
5
23
1.67
17637--17668
15
2.1
15
94
0
55
15
9
28
46
1.77
20655--20728
29
2.5
31
86
6
107
32
12
25
29
1.92
20610--20728
31
3.9
30
79
8
116
32
13
24
29
1.93
26331--26366
18
2.1
18
89
5
56
33
11
11
44
1.75
26883--26912
15
2.1
15
93
6
53
63
6
16
13
1.50
32698--32761
21
3.1
21
93
2
112
28
26
14
31
1.95
34795--34837
12
3.3
13
84
9
52
69
4
20
4
1.25
34795--34837
14
3.2
14
87
6
54
69
4
20
4
1.25
39711--39757
26
1.9
24
87
12
69
40
4
25
29
1.75
40594--40655
21
3.0
21
95
0
106
30
25
14
29
1.95
41356--41410
28
2.0
28
100
0
110
14
14
29
41
1.85
41551--41675
61
2.1
61
92
4
211
32
8
16
41
1.79
42582--42664
22
3.6
22
73
12
67
42
22
18
16
1.89
42580--42682
48
2.1
48
90
0
161
40
24
16
18
1.90
49264--49342
32
2.5
32
82
0
104
32
17
16
32
1.93
62534--62612
23
3.3
23
71
13
77
41
11
30
16
1.83
62527--62691
50
3.3
49
86
3
231
38
10
27
23
1.87
62922--62987
28
2.4
28
94
0
114
13
13
28
43
1.82
63125--63242
61
1.9
61
98
0
227
31
10
17
40
1.83
64365--64467
48
2.1
48
90
0
161
39
25
16
18
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72638--72677
21
1.9
21
89
0
62
17
27
22
32
1.96

Tables:   1

The End!