genome.fa.s22080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022080.1 Corchorus olitorius cultivar O-4 contig22113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38893

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356--397	3	14.0	3	94	0	75	64	0	33	2	1.07
9511--9550	15	2.6	16	88	4	55	62	12	7	17	1.52
12208--12414	48	4.5	48	82	9	277	12	20	22	44	1.84
12248--12328	40	2.0	40	87	0	117	12	22	23	41	1.87
12208--12376	88	1.9	88	92	0	284	11	20	23	44	1.84
12437--12993	43	12.7	43	80	7	620	20	25	18	36	1.95
12426--12993	221	2.6	216	87	5	768	20	25	17	36	1.94
12473--13001	178	3.0	177	91	1	815	19	25	17	36	1.94
13010--13290	81	3.5	81	84	4	379	18	24	19	37	1.94
13009--13285	121	2.3	121	86	3	371	18	25	19	36	1.94
13010--13292	40	7.0	40	82	5	347	18	24	19	37	1.94
13308--13508	40	4.8	40	78	9	159	10	25	22	40	1.87
13220--13505	128	2.2	127	79	5	281	12	25	21	40	1.89
13340--13808	88	5.3	88	88	2	692	11	23	22	41	1.87
13510--13769	40	6.1	40	72	17	177	11	22	23	42	1.86
14298--14335	14	2.6	15	91	4	60	2	5	21	71	1.19
15085--15211	66	1.9	66	83	0	164	25	23	14	36	1.93
17895--17934	20	2.0	20	95	0	71	35	12	10	42	1.76
21518--21968	101	4.4	101	79	6	367	42	4	15	37	1.67
21506--21968	51	9.1	50	73	11	318	42	4	15	36	1.67
21810--21995	100	1.9	100	89	4	295	41	3	16	38	1.65
21964--22112	50	2.9	50	80	7	165	44	7	12	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22659--22739	40	2.0	40	85	0	108	12	23	22	41	1.87
22699--22874	48	3.6	48	96	0	307	11	22	22	43	1.85
22699--22874	97	1.8	96	93	1	307	11	22	22	43	1.85
22709--22924	97	2.2	97	81	5	231	13	23	21	41	1.89
22893--23581	43	15.8	43	81	8	703	20	25	17	36	1.95
22854--23589	262	2.8	263	88	2	1129	19	26	17	36	1.94
22856--23589	178	4.2	176	80	9	877	19	26	17	36	1.94
23597--23800	41	5.1	40	82	4	257	20	24	18	36	1.94
23598--23800	81	2.5	80	86	3	282	19	24	18	36	1.94
23816--23905	40	2.3	40	86	1	128	11	27	18	42	1.84
23887--24263	48	8.4	48	72	17	249	12	22	19	44	1.85
23935--24348	88	4.8	86	84	5	487	13	24	19	43	1.86
23843--24089	136	1.8	136	92	3	417	11	21	20	46	1.82
23983--24218	40	5.5	40	70	16	168	12	25	19	42	1.86
23942--24333	176	2.3	173	89	3	585	13	23	19	43	1.87
26333--26392	28	2.1	28	93	0	102	35	15	20	30	1.93
28156--28202	19	2.5	19	86	6	69	48	23	14	12	1.78
33361--33394	6	5.7	6	86	13	52	85	0	14	0	0.60
33360--33396	12	3.1	12	88	11	58	81	0	18	0	0.70
34913--35671	40	18.9	41	86	4	987	37	20	25	16	1.93

Tables:   1

The End!