Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022084.1 Corchorus olitorius cultivar O-4 contig22117, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34440

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11028--11904
437
2.0
437
96
0
1610
23
14
27
35
1.93
13621--14119
40
11.8
40
75
13
401
17
26
20
35
1.94
13571--14119
87
6.4
87
85
5
697
17
26
20
35
1.94
14810--14857
25
1.9
25
82
0
60
45
2
4
47
1.33
17410--17474
22
3.0
21
82
12
78
33
18
4
43
1.71
17469--17829
22
16.4
21
68
14
133
37
16
8
37
1.80
17416--17569
69
2.2
68
81
3
166
37
17
9
35
1.82
17506--17617
46
2.4
48
86
3
147
38
13
12
35
1.82
17905--18003
22
4.5
22
78
2
92
35
16
7
41
1.75
18049--18198
22
7.0
22
71
5
83
37
16
8
38
1.79
17943--18140
105
1.9
105
80
3
229
36
21
5
36
1.77
18236--18563
22
14.8
22
70
14
142
35
16
10
38
1.82
18237--18563
44
7.4
44
70
14
185
35
16
10
38
1.82
18418--18471
27
2.0
27
88
0
81
33
14
5
46
1.68
18445--18607
65
2.5
66
82
5
190
39
17
7
34
1.79
18210--18607
22
18.0
22
70
11
113
35
17
9
37
1.83
18445--18587
66
2.2
65
83
3
180
39
17
7
35
1.78
18978--19142
22
7.6
21
72
13
111
36
13
10
38
1.81
18978--19081
43
2.4
44
81
1
120
38
13
10
37
1.79

Tables:   1

The End!