Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022087.1 Corchorus olitorius cultivar O-4 contig22120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3236
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:340 original size:24 final size:23

Alignment explanation


    Indices: 297--342  Score: 58
    Period size: 24  Copynumber: 2.0  Consensus size: 23

        287 GTTGCTTAAT

                           *       
        297 TTTATTATTTTATTATTTTCTTG
          1 TTTATTATTTTATTAGTTTCTTG

                                    
        320 TTTATTTATTTTTATT-GTTTCTT
          1 TTTA-TTA-TTTTATTAGTTTCTT

        343 TAATTCAAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  23    4  0.20
  24    9  0.45
  25    7  0.35

ACGTcount: A:0.15, C:0.04, G:0.04, T:0.76


Consensus pattern (23 bp):   
TTTATTATTTTATTAGTTTCTTG
Done.