Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022088.1 Corchorus olitorius cultivar O-4 contig22121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73401

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
539--772
117
2.0
117
100
0
468
22
7
17
52
1.69
1190--1235
24
2.0
23
83
12
58
15
4
4
76
1.11
12650--12680
1
31.0
1
100
0
62
100
0
0
0
0.00
19324--19373
16
3.1
15
80
8
55
80
14
4
2
0.95
19663--19797
67
2.0
67
98
0
261
44
4
15
35
1.67
25278--25316
20
1.9
21
85
15
55
25
2
2
69
1.14
27255--27297
19
2.4
17
84
11
50
13
18
4
62
1.48
29920--29980
32
2.0
30
93
3
95
19
22
26
31
1.98
44964--45077
4
28.8
4
74
3
79
65
3
7
22
1.34
44964--45036
28
2.6
28
93
0
119
65
1
9
23
1.30
47367--47406
13
3.2
12
85
7
53
52
12
0
35
1.39
47373--47414
12
3.5
12
81
9
50
59
14
0
26
1.35
47369--47415
24
2.0
24
87
8
69
57
12
0
29
1.36
50899--50934
18
2.1
18
89
5
56
38
11
5
44
1.63
52677--52734
19
3.0
18
78
12
62
13
31
8
46
1.74
59128--59156
14
2.1
14
100
0
58
34
20
6
37
1.80
59281--59341
30
2.0
30
100
0
122
31
32
3
32
1.74
62059--62245
66
2.8
67
82
7
193
39
17
19
23
1.92
62278--62574
67
4.5
67
83
5
334
41
18
17
22
1.90
66163--66206
22
2.0
22
95
0
79
43
13
15
27
1.85

Tables:   1

The End!