Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002209.1 Corchorus olitorius cultivar O-4 contig02209, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5067
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29


Found at i:5027 original size:2 final size:2

Alignment explanation


    Indices: 5020--5062  Score: 86
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       5010 TTGAATGCCC

                                                                          
       5020 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

             
       5062 A
          1 A

       5063 GAAGT


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.