Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022090.1 Corchorus olitorius cultivar O-4 contig22123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23827

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
293--365
21
3.4
21
78
1
74
15
20
46
17
1.84
3621--3659
19
2.0
20
85
10
53
33
15
10
41
1.81
3631--3698
25
2.8
23
82
10
91
33
13
10
42
1.78
3833--3904
29
2.4
29
88
2
99
36
36
12
15
1.85
4075--4116
15
2.7
15
92
3
66
64
14
9
11
1.50
11563--11598
14
2.8
12
84
15
54
36
16
5
41
1.72
13073--13097
13
1.9
13
100
0
50
40
16
12
32
1.84
16644--16966
29
11.3
28
82
6
364
35
24
21
19
1.96
17200--17671
59
8.0
59
84
5
553
43
15
16
24
1.87
17200--17638
237
1.9
232
85
6
614
43
16
16
23
1.87
18544--18600
18
3.2
18
70
2
53
7
15
15
61
1.54
18592--18620
1
29.0
1
100
0
58
0
0
0
100
0.00
18495--18603
36
3.0
37
83
5
141
9
20
12
57
1.62

Tables:   1

The End!