Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022094.1 Corchorus olitorius cultivar O-4 contig22127, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2527
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29


Found at i:60 original size:17 final size:16

Alignment explanation


    Indices: 38--75  Score: 76
    Period size: 16  Copynumber: 2.4  Consensus size: 16

         28 GCTACTAGTA

                            
         38 TTTTTTTTTTTTTTGC
          1 TTTTTTTTTTTTTTGC

                            
         54 TTTTTTTTTTTTTTGC
          1 TTTTTTTTTTTTTTGC

                  
         70 TTTTTT
          1 TTTTTT

         76 GGTGTGGCAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   22  1.00

ACGTcount: A:0.00, C:0.05, G:0.05, T:0.89


Consensus pattern (16 bp):   
TTTTTTTTTTTTTTGC
Done.