Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022101.1 Corchorus olitorius cultivar O-4 contig22134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32318

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1498--2409
492
1.8
488
85
3
1110
32
17
15
34
1.91
3027--3132
22
4.9
23
79
7
98
33
11
16
38
1.84
3093--3197
22
4.8
22
78
9
117
40
9
16
34
1.81
3237--3316
22
3.6
22
81
8
74
42
12
10
35
1.76
3260--3316
24
2.5
22
86
11
71
45
10
8
35
1.70
3319--3381
22
2.9
22
80
0
72
34
6
22
36
1.80
3260--3381
44
2.7
44
76
9
122
39
9
16
35
1.80
3433--3487
21
2.5
22
85
5
67
43
5
14
36
1.69
5982--6019
19
2.0
20
85
15
53
28
5
2
63
1.30
6185--6417
22
10.5
22
69
13
120
38
9
15
37
1.79
6187--6335
44
3.4
44
81
7
151
38
10
14
36
1.80
6182--6568
66
5.6
67
73
13
281
36
9
17
36
1.82
6187--6382
22
8.8
22
75
8
121
37
9
15
37
1.80
6422--6840
22
18.8
22
70
13
162
38
10
15
34
1.83
6985--7183
22
9.2
20
74
15
109
40
8
16
34
1.78
6985--7103
44
2.7
44
81
5
125
42
9
15
33
1.78
7108--7183
23
3.3
23
88
1
100
39
6
17
36
1.75
8913--8968
22
2.5
22
85
5
69
37
10
14
37
1.81
9019--9081
21
2.9
22
73
4
65
34
12
15
36
1.86
9050--9096
22
2.1
22
84
7
60
42
10
19
27
1.84
12030--12132
49
2.1
49
83
5
129
52
4
13
29
1.61
12247--12357
43
2.6
41
79
11
118
38
3
8
49
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13231--13285
21
2.7
20
80
5
65
38
14
1
45
1.56
14258--14342
30
2.8
30
82
10
84
38
5
12
42
1.68
14284--14342
31
1.9
30
86
10
84
37
6
15
40
1.74
14951--15067
22
5.3
22
72
17
73
41
9
14
34
1.78
14949--15068
44
2.7
42
80
8
123
41
10
14
34
1.79
15391--15487
22
4.5
22
78
7
92
40
10
18
30
1.84
15391--15487
44
2.3
43
81
3
115
40
10
18
30
1.84
15576--15783
22
9.6
22
81
4
226
35
12
15
36
1.85
15576--15764
44
4.3
44
89
2
265
36
12
15
35
1.85
15576--15783
87
2.4
87
86
4
269
35
12
15
36
1.85
18736--18822
45
1.9
45
97
0
165
24
20
24
31
1.98

Tables:   1

The End!