Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022105.1 Corchorus olitorius cultivar O-4 contig22138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84862

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2756--2782
1
27.0
1
100
0
54
100
0
0
0
0.00
2942--2987
15
2.9
17
81
12
53
54
0
0
45
0.99
3986--4059
37
2.0
37
100
0
148
40
32
10
16
1.83
4597--4935
179
1.9
178
87
4
504
33
14
16
35
1.90
14043--14172
45
2.9
45
97
0
251
37
22
6
33
1.81
19963--20003
2
19.5
2
85
9
55
46
4
2
46
1.37
19963--20003
19
2.2
19
86
8
57
46
4
2
46
1.37
20923--21006
21
3.9
22
83
7
100
40
8
16
34
1.79
20977--21035
29
2.0
29
86
0
82
37
10
10
42
1.73
21006--21079
22
3.4
21
78
15
87
39
9
13
37
1.77
21326--21368
21
2.0
21
82
8
52
41
6
4
46
1.51
22158--22192
18
1.9
18
94
0
61
54
5
14
25
1.62
27865--27933
16
4.4
16
74
20
65
8
18
37
34
1.82
28725--28758
16
2.1
16
100
0
68
58
0
11
29
1.33
34354--34384
3
10.3
3
100
0
62
32
0
35
32
1.58
48493--48541
23
2.1
23
100
0
98
40
12
4
42
1.61
48688--48817
46
2.9
46
89
2
192
43
16
11
28
1.82
56436--56476
21
2.1
19
86
9
55
53
34
2
9
1.47
60105--60153
26
2.0
26
92
8
84
42
14
30
12
1.82
69393--69437
9
5.0
9
77
0
54
42
0
35
22
1.54
72263--72345
41
2.0
41
95
0
148
44
13
26
15
1.83
72269--72331
19
3.2
19
65
12
54
46
12
26
14
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76465--76501
6
6.0
6
93
6
65
0
32
0
67
0.91
76465--76499
13
2.8
13
95
4
63
0
28
0
71
0.86
76465--76501
19
1.9
19
100
0
74
0
32
0
67
0.91
83648--83750
21
4.8
21
72
11
82
10
44
0
44
1.38
83664--83719
15
3.7
15
79
9
60
3
51
0
44
1.18
83714--83915
102
2.0
102
94
0
350
15
33
11
39
1.84
84827--84861
2
17.5
2
100
0
70
51
0
48
0
1.00

Tables:   1

The End!