Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022106.1 Corchorus olitorius cultivar O-4 contig22139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56753

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4256--4282
14
1.9
14
100
0
54
11
29
14
44
1.80
8904--8954
14
3.4
14
75
19
57
3
33
9
52
1.53
8897--8952
18
3.4
17
76
16
64
5
35
8
50
1.57
13777--13802
12
2.2
12
100
0
52
34
15
0
50
1.45
14628--14676
19
2.5
20
80
16
57
32
2
8
57
1.40
14713--14740
1
28.0
1
100
0
56
0
0
0
100
0.00
15963--16011
21
2.4
20
83
6
62
34
2
12
51
1.51
16535--16594
26
2.3
26
88
0
84
31
16
8
43
1.78
17218--17247
6
4.8
6
95
4
51
46
36
0
16
1.47
18134--18184
24
2.1
24
96
3
93
15
0
21
62
1.32
18134--18183
25
2.1
23
88
7
73
16
0
22
62
1.33
20897--20944
20
2.4
20
100
0
96
45
4
10
39
1.58
27810--27909
51
2.0
51
94
2
175
29
14
15
42
1.85
27897--27935
19
2.1
19
95
0
69
15
33
25
25
1.95
27980--28075
49
2.0
49
97
0
183
22
22
35
18
1.96
28638--28666
15
1.9
15
100
0
58
86
0
13
0
0.58
34980--35010
9
3.4
9
100
0
62
45
19
35
0
1.51
41858--42321
231
2.0
231
99
0
919
29
24
9
36
1.86
44829--44862
16
2.1
16
88
0
50
41
35
14
8
1.77
45571--45617
22
2.1
22
84
0
58
61
2
12
23
1.42
45499--45677
93
1.9
93
91
2
297
50
2
12
34
1.53
45689--45781
31
3.0
31
93
0
168
41
6
21
30
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46409--46487
31
2.5
31
80
8
106
31
15
17
35
1.91
51993--52056
21
3.2
20
77
8
67
31
20
7
40
1.81
52014--52050
19
1.9
19
88
0
56
32
18
10
37
1.86
53122--53155
2
17.0
2
100
0
68
50
0
0
50
1.00
56336--56385
21
2.5
19
81
9
55
62
0
14
24
1.32

Tables:   1

The End!