Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022107.1 Corchorus olitorius cultivar O-4 contig22140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3990
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:992 original size:15 final size:15

Alignment explanation


    Indices: 974--1033  Score: 57
    Period size: 15  Copynumber: 4.0  Consensus size: 15

        964 CGCCAATGAT

                         * 
        974 GTTTCCACCTATGGC
          1 GTTTCCACCTATGCC

                 *    *    
        989 GTTTCAACCTTTGCC
          1 GTTTCCACCTATGCC

              *   * *      
       1004 GTATCCGCGTATGCC
          1 GTTTCCACCTATGCC

               *           
       1019 GTTGCCACCTATGCC
          1 GTTTCCACCTATGCC

       1034 ATACCAACCC


Statistics
Matches: 33,  Mismatches: 12, Indels: 0
        0.73            0.27        0.00

Matches are distributed among these distances:
  15   33  1.00

ACGTcount: A:0.13, C:0.35, G:0.20, T:0.32


Consensus pattern (15 bp):   
GTTTCCACCTATGCC
Done.