Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022108.1 Corchorus olitorius cultivar O-4 contig22141, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2785
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34


Found at i:2204 original size:21 final size:19

Alignment explanation


    Indices: 2176--2225  Score: 55
    Period size: 21  Copynumber: 2.5  Consensus size: 19

       2166 AGAAAAAGGG

                          *     
       2176 AAATAGGAAAGTAATAATAT
          1 AAATAGGAAAGTAAAAAT-T

                       *        
       2196 AAATAAGGAAATTAAAAATT
          1 AAAT-AGGAAAGTAAAAATT

                *     
       2216 AAATTGGAAA
          1 AAATAGGAAA

       2226 TTAATATTTG


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  19    5  0.19
  20    9  0.35
  21   12  0.46

ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24


Consensus pattern (19 bp):   
AAATAGGAAAGTAAAAATT
Done.