Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022109.1 Corchorus olitorius cultivar O-4 contig22142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40932

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4931--5032
31
3.4
31
83
8
129
40
3
21
34
1.72
9307--9543
124
1.9
123
84
2
314
31
14
17
36
1.90
9586--9627
13
3.5
13
75
24
56
26
4
9
59
1.48
9581--9627
22
2.1
22
96
0
85
23
4
12
59
1.51
10503--10541
18
2.2
18
86
9
53
20
0
20
58
1.39
12385--12442
28
2.1
28
86
0
80
56
8
13
20
1.63
18003--18106
49
2.1
50
92
5
176
43
20
8
27
1.81
18341--18748
178
2.3
178
79
3
462
36
16
14
32
1.89
18940--19026
41
2.1
41
95
0
156
26
18
35
19
1.95
20380--20405
2
13.0
2
100
0
52
50
0
0
50
1.00
20499--20564
34
1.9
34
90
0
105
25
10
21
42
1.85
22266--22476
52
4.1
52
92
1
347
36
19
15
28
1.92
22378--22468
28
3.4
28
64
11
82
36
19
14
29
1.91
28292--28386
49
1.9
49
86
0
136
24
28
24
23
2.00
28965--29027
30
2.1
30
90
0
99
31
11
23
33
1.90
28995--29234
131
1.8
131
95
0
435
29
16
24
29
1.97
38157--38229
28
2.4
29
82
13
87
46
23
12
17
1.82

Tables:   1

The End!