Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022111.1 Corchorus olitorius cultivar O-4 contig22144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4752
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:1853 original size:14 final size:15

Alignment explanation


    Indices: 1834--1863  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1824 CAATTAAAGC

                           
       1834 AATAAT-CAAGGAAA
          1 AATAATGCAAGGAAA

                           
       1848 AATAATGCAAGGAAA
          1 AATAATGCAAGGAAA

             
       1863 A
          1 A

       1864 TTAAAGAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13


Consensus pattern (15 bp):   
AATAATGCAAGGAAA

Found at i:2261 original size:22 final size:21

Alignment explanation


    Indices: 2219--2261  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2209 TTGGAATGGC

                       *         
       2219 GATGGCACGGGCATGGCCGGT
          1 GATGGCACGGGAATGGCCGGT

                             *    
       2240 GATGGCACGGTGAATGGGCGGT
          1 GATGGCACGG-GAATGGCCGGT

       2262 AATGACTTGG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.16, C:0.19, G:0.49, T:0.16


Consensus pattern (21 bp):   
GATGGCACGGGAATGGCCGGT
Done.