Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022116.1 Corchorus olitorius cultivar O-4 contig22149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20459

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2714--2752
18
2.1
19
85
4
53
17
0
10
71
1.12
6099--6152
28
2.0
27
85
7
74
16
5
3
74
1.16
6385--6466
39
2.1
39
90
0
128
54
4
18
21
1.62
6414--6468
28
1.9
28
85
10
76
58
1
18
21
1.49
6485--6548
33
1.9
33
90
0
101
45
12
14
28
1.81
7012--7071
20
3.0
20
100
0
120
35
25
20
20
1.96
9623--9649
1
27.0
1
100
0
54
100
0
0
0
0.00
9877--9905
2
14.5
2
100
0
58
51
0
0
48
1.00
10232--10336
31
3.5
30
82
10
99
26
27
19
26
1.99
14569--14767
45
4.4
45
89
0
263
23
42
2
31
1.67
14975--15003
15
1.9
15
100
0
58
27
13
24
34
1.93
16504--16572
20
3.5
20
93
0
120
18
31
18
30
1.96
16631--16699
29
2.3
29
85
5
84
27
20
23
28
1.99
16653--16726
29
2.5
29
84
8
87
29
17
28
24
1.97
18374--18572
30
6.6
30
99
0
389
30
19
20
29
1.97

Tables:   1

The End!