Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022117.1 Corchorus olitorius cultivar O-4 contig22150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14997
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:4078 original size:30 final size:30

Alignment explanation


    Indices: 4022--4081  Score: 77
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       4012 CAGTTCTTGC

                *               *         
       4022 TCTTGAAATTATTCTTCAATGGTCTTCAAA
          1 TCTTCAAATTATTCTTCAATAGTCTTCAAA

                                  *        
       4052 TCTTCAAATTA-TCTTCAATAATTCTTCAAA
          1 TCTTCAAATTATTCTTCAAT-AGTCTTCAAA

       4082 CACGAGCTTC


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  29    8  0.31
  30   18  0.69

ACGTcount: A:0.33, C:0.18, G:0.05, T:0.43


Consensus pattern (30 bp):   
TCTTCAAATTATTCTTCAATAGTCTTCAAA
Done.