Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002212.1 Corchorus olitorius cultivar O-4 contig02212, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 638

Length: 1064
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38


Found at i:870 original size:14 final size:14

Alignment explanation


    Indices: 860--889  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        850 TAATAAATTT

                          
        860 TACTAAATAAATAA
          1 TACTAAATAAATAA

                          
        874 TACTAAATAAATAA
          1 TACTAAATAAATAA

              
        888 TA
          1 TA

        890 TATAAATACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30


Consensus pattern (14 bp):   
TACTAAATAAATAA

Found at i:897 original size:15 final size:15

Alignment explanation


    Indices: 863--916  Score: 58
    Period size: 15  Copynumber: 3.7  Consensus size: 15

        853 TAAATTTTAC

                          *
        863 TAAATAAATAATA-C
          1 TAAATAAATAATATA

                           
        877 TAAATAAATAATATA
          1 TAAATAAATAATATA

                  *         
        892 TAAATACATAGA-ATA
          1 TAAATAAATA-ATATA

            *         
        907 AAAATAAATA
          1 TAAATAAATA

        917 TTTATATATA


Statistics
Matches: 34,  Mismatches: 4, Indels: 3
        0.83            0.10        0.07

Matches are distributed among these distances:
  14   13  0.38
  15   20  0.59
  16    1  0.03

ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28


Consensus pattern (15 bp):   
TAAATAAATAATATA
Done.