Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022124.1 Corchorus olitorius cultivar O-4 contig22157, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3707
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38


Found at i:3230 original size:18 final size:19

Alignment explanation


    Indices: 3207--3243  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       3197 CTCCTCTATC

                      *        
       3207 ATGAAAAC-ACTTTTTTTT
          1 ATGAAAACAAATTTTTTTT

                               
       3225 ATGAAAACAAATTTTTTTT
          1 ATGAAAACAAATTTTTTTT

       3244 TAATTACCCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49


Consensus pattern (19 bp):   
ATGAAAACAAATTTTTTTT
Done.