Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022127.1 Corchorus olitorius cultivar O-4 contig22160, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2954
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29


Found at i:1700 original size:21 final size:21

Alignment explanation


    Indices: 1676--1720  Score: 72
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1666 GGGTATTTGG

                          *      
       1676 CGGGCATAACCGGTGGTGGCA
          1 CGGGCATAACCGGTAGTGGCA

                 *               
       1697 CGGGCTTAACCGGTAGTGGCA
          1 CGGGCATAACCGGTAGTGGCA

               
       1718 CGG
          1 CGG

       1721 TGGATGGTCG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.18, C:0.24, G:0.42, T:0.16


Consensus pattern (21 bp):   
CGGGCATAACCGGTAGTGGCA

Found at i:2387 original size:15 final size:16

Alignment explanation


    Indices: 2363--2402  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       2353 AGAGGTTGAA

                 *          
       2363 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                            
       2378 AGAAAACAATTAAACT
          1 AGAAAACAATTAAACT

                     
       2394 AGAAAACAA
          1 AGAAAACAA

       2403 AGCAAAGTAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.65, C:0.12, G:0.10, T:0.12


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.