Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022128.1 Corchorus olitorius cultivar O-4 contig22161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5287
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:674 original size:17 final size:17

Alignment explanation


    Indices: 652--685  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        642 ACCCAAGGTT

                             
        652 GGAGAATGTAAGTGCAA
          1 GGAGAATGTAAGTGCAA

                             
        669 GGAGAATGTAAGTGCAA
          1 GGAGAATGTAAGTGCAA

        686 TCACCTTAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.41, C:0.06, G:0.35, T:0.18


Consensus pattern (17 bp):   
GGAGAATGTAAGTGCAA

Found at i:2433 original size:21 final size:21

Alignment explanation


    Indices: 2407--2461  Score: 74
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       2397 CACCCATTCA

                           **    
       2407 CCGTGCCACCACCGGTTAAGC
          1 CCGTGCCACCACCGGCCAAGC

                              *  
       2428 CCGTGCCACCACCGGCCATGC
          1 CCGTGCCACCACCGGCCAAGC

                    *    
       2449 CCGTGCCATCACC
          1 CCGTGCCACCACC

       2462 ATTCTATGTC


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.16, C:0.49, G:0.22, T:0.13


Consensus pattern (21 bp):   
CCGTGCCACCACCGGCCAAGC
Done.