Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: AWUE01022128.1 Corchorus olitorius cultivar O-4 contig22161, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 5287 ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31 Found at i:674 original size:17 final size:17 Alignment explanation
Indices: 652--685 Score: 68 Period size: 17 Copynumber: 2.0 Consensus size: 17 642 ACCCAAGGTT 652 GGAGAATGTAAGTGCAA 1 GGAGAATGTAAGTGCAA 669 GGAGAATGTAAGTGCAA 1 GGAGAATGTAAGTGCAA 686 TCACCTTAAG Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 17 1.00 ACGTcount: A:0.41, C:0.06, G:0.35, T:0.18 Consensus pattern (17 bp): GGAGAATGTAAGTGCAA Found at i:2433 original size:21 final size:21 Alignment explanation
Indices: 2407--2461 Score: 74 Period size: 21 Copynumber: 2.6 Consensus size: 21 2397 CACCCATTCA ** 2407 CCGTGCCACCACCGGTTAAGC 1 CCGTGCCACCACCGGCCAAGC * 2428 CCGTGCCACCACCGGCCATGC 1 CCGTGCCACCACCGGCCAAGC * 2449 CCGTGCCATCACC 1 CCGTGCCACCACC 2462 ATTCTATGTC Statistics Matches: 30, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 21 30 1.00 ACGTcount: A:0.16, C:0.49, G:0.22, T:0.13 Consensus pattern (21 bp): CCGTGCCACCACCGGCCAAGC Done.