Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022130.1 Corchorus olitorius cultivar O-4 contig22163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90617

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1314--1350
10
3.7
10
100
0
74
29
0
37
32
1.58
3770--3818
21
2.3
21
82
0
62
20
22
40
16
1.91
7437--7476
15
2.6
16
88
4
55
62
12
10
15
1.54
21941--21966
13
2.0
13
100
0
52
15
0
30
53
1.42
22346--22392
19
2.5
19
75
3
51
48
0
2
48
1.13
25023--25076
21
2.5
22
75
22
60
12
18
44
24
1.85
28072--28141
32
2.3
29
87
7
95
51
15
5
27
1.66
30166--30477
37
8.4
37
80
4
290
26
17
37
17
1.92
30327--30435
18
5.8
20
67
14
72
23
17
41
17
1.90
35879--35938
15
4.0
15
76
4
50
20
20
25
35
1.96
36072--36230
84
1.9
84
90
2
257
22
27
18
30
1.98
36419--36489
37
1.9
37
85
5
99
22
25
19
32
1.98
36543--36574
14
2.2
15
94
5
57
84
0
15
0
0.63
36729--36771
22
2.0
22
95
0
77
20
9
39
30
1.84
41904--41942
21
1.9
20
84
5
51
56
0
25
17
1.41
51827--51876
26
1.9
26
95
0
91
14
0
40
46
1.44
52498--52537
18
2.2
18
86
13
55
47
2
20
30
1.63
64689--64719
14
2.1
15
94
5
55
48
32
6
12
1.67
65397--65470
38
1.9
39
94
2
132
39
10
10
39
1.75
76313--76360
22
2.1
23
84
3
62
60
6
31
2
1.33
77503--77920
209
2.0
210
93
0
721
35
12
14
37
1.84
78563--78587
9
2.8
9
100
0
50
60
8
0
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82593--82644
22
2.4
22
76
0
59
26
44
23
5
1.76
83138--83505
105
3.5
105
95
1
621
39
8
9
42
1.68
86524--86562
20
1.9
21
89
5
62
41
20
0
38
1.53
88388--88429
11
3.7
11
81
15
50
42
0
2
54
1.13
90010--90081
21
3.4
21
84
5
92
41
23
9
25
1.84
90032--90498
88
5.4
87
81
6
556
36
21
16
25
1.94
90280--90321
21
1.9
21
85
9
57
40
21
19
19
1.92
90460--90521
21
3.0
21
97
0
115
37
29
12
20
1.90
90032--90617
257
2.2
263
88
6
844
36
21
16
24
1.94
90416--90600
102
1.8
101
88
5
284
38
22
16
22
1.93
90557--90598
21
1.9
23
85
9
61
40
21
21
16
1.91

Tables:   1

The End!