Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022138.1 Corchorus olitorius cultivar O-4 contig22171, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3790
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:2786 original size:18 final size:19

Alignment explanation


    Indices: 2763--2799  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

       2753 CACCCTAGCC

                     *         
       2763 CTAAAACTAGAAGA-AAAA
          1 CTAAAACTAAAAGAGAAAA

                               
       2781 CTAAAACTAAAAGAGAAAA
          1 CTAAAACTAAAAGAGAAAA

       2800 AGAAGAGAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18   13  0.76
  19    4  0.24

ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11


Consensus pattern (19 bp):   
CTAAAACTAAAAGAGAAAA

Found at i:3433 original size:18 final size:19

Alignment explanation


    Indices: 3410--3445  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       3400 TGGAAATAAT

                               
       3410 TCTTCAA-TGGTCTTCAAA
          1 TCTTCAATTGGTCTTCAAA

                     *        
       3428 TCTTCAATTTGTCTTCAA
          1 TCTTCAATTGGTCTTCAA

       3446 TAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.25, C:0.22, G:0.08, T:0.44


Consensus pattern (19 bp):   
TCTTCAATTGGTCTTCAAA

Done.