Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022141.1 Corchorus olitorius cultivar O-4 contig22174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3093
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30


Found at i:745 original size:51 final size:50

Alignment explanation


    Indices: 644--746  Score: 120
    Period size: 51  Copynumber: 2.0  Consensus size: 50

        634 GTTCTTCATA

                                            *         *       
        644 TTTTTCTTGTTTAGATCTTGTCTCAGGACAATCAAACACTCTTTTAGTGT
          1 TTTTTCTTGTTTAGATCTTGTCTCAGGACAATAAAACACTCTATTAGTGT

                                      *                *    *    
        694 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGAC-ATAAAAACACTGTATTCGTGT
          1 TTTT-TCTTGTTT-AGATCTTGTCTCAGGACAAT-AAAACACTCTATTAGTGT

              
        745 TT
          1 TT

        747 CTCTTTCAGA


Statistics
Matches: 45,  Mismatches: 5, Indels: 5
        0.82            0.09        0.09

Matches are distributed among these distances:
  50    6  0.13
  51   38  0.84
  52    1  0.02

ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46


Consensus pattern (50 bp):   
TTTTTCTTGTTTAGATCTTGTCTCAGGACAATAAAACACTCTATTAGTGT
Done.