Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022142.1 Corchorus olitorius cultivar O-4 contig22175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6965

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
603--887
107
2.7
106
89
3
416
42
8
7
42
1.63
603--929
107
3.1
107
85
4
371
42
9
6
41
1.63
1380--1450
31
2.2
31
82
10
79
45
0
2
52
1.15
2933--2978
2
26.0
2
76
24
50
56
0
0
43
0.99
2934--3035
29
3.4
30
78
16
113
57
0
2
38
1.20
2940--3080
3
49.0
3
68
20
79
58
2
4
34
1.32
2940--3084
35
4.3
34
78
14
158
58
2
4
34
1.31
3001--3068
29
2.3
30
82
5
86
57
5
4
32
1.43
2940--3084
70
2.2
66
87
8
204
58
2
4
34
1.31
2933--3083
5
28.0
5
75
19
103
57
2
3
35
1.31
2940--3039
14
7.2
14
77
18
77
58
1
4
37
1.24
3451--3587
2
72.0
2
70
17
60
43
2
0
53
1.15
3448--3586
9
15.3
9
72
15
81
43
2
0
53
1.15
3450--3587
11
12.8
11
69
13
90
43
2
0
53
1.15
4001--4081
41
2.0
41
95
0
144
35
13
11
39
1.80
4874--4918
22
2.0
22
95
0
81
40
4
0
55
1.20
5773--5808
13
2.8
13
87
4
56
0
11
2
86
0.68
5776--5814
12
3.2
12
85
3
51
2
7
2
87
0.73

Tables:   1

The End!