Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022144.1 Corchorus olitorius cultivar O-4 contig22177, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6337
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28


Found at i:4040 original size:12 final size:13

Alignment explanation


    Indices: 4022--4051  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       4012 GTTTTCTTTA

                         
       4022 ATTTTCTTGATTG
          1 ATTTTCTTGATTG

                         
       4035 -TTTTCTTGATTG
          1 ATTTTCTTGATTG

                 
       4047 ATTTT
          1 ATTTT

       4052 AATTGCTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67


Consensus pattern (13 bp):   
ATTTTCTTGATTG

Found at i:5371 original size:17 final size:18

Alignment explanation


    Indices: 5346--5379  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       5336 TACTTATATG

                *             
       5346 TGGCGTTGG-AAAAATTA
          1 TGGCCTTGGTAAAAATTA

                             
       5363 TGGCCTTGGTAAAAATT
          1 TGGCCTTGGTAAAAATT

       5380 GGCCAAATTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32


Consensus pattern (18 bp):   
TGGCCTTGGTAAAAATTA

Done.