Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022148.1 Corchorus olitorius cultivar O-4 contig22181, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4825
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30


Found at i:920 original size:21 final size:22

Alignment explanation


    Indices: 896--951  Score: 89
    Period size: 21  Copynumber: 2.6  Consensus size: 22

        886 GCGTTTGTGG

                                  
        896 CTTCTTCTCGGCGCTTT-GCCT
          1 CTTCTTCTCGGCGCTTTCGCCT

                                  
        917 CTTCTTCTCGGCG-TTTCGCCT
          1 CTTCTTCTCGGCGCTTTCGCCT

                *         
        938 CTTCATCTCGGCGC
          1 CTTCTTCTCGGCGC

        952 ACTAATTCTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 3
        0.89            0.03        0.08

Matches are distributed among these distances:
  20    3  0.09
  21   29  0.91

ACGTcount: A:0.02, C:0.39, G:0.20, T:0.39


Consensus pattern (22 bp):   
CTTCTTCTCGGCGCTTTCGCCT
Done.