Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022152.1 Corchorus olitorius cultivar O-4 contig22185, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7329
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:4476 original size:26 final size:26

Alignment explanation


    Indices: 4442--4497  Score: 85
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       4432 TGAATGTTCA

                *     *        *      
       4442 GTGGTGAGGATCGAGAGATTGTGTGT
          1 GTGGAGAGGACCGAGAGATCGTGTGT

                                      
       4468 GTGGAGAGGACCGAGAGATCGTGTGT
          1 GTGGAGAGGACCGAGAGATCGTGTGT

                
       4494 GTGG
          1 GTGG

       4498 TTGTGATTGC


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25


Consensus pattern (26 bp):   
GTGGAGAGGACCGAGAGATCGTGTGT
Done.