Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022154.1 Corchorus olitorius cultivar O-4 contig22187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1121
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:496 original size:16 final size:15

Alignment explanation


    Indices: 458--499  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        448 ACAGAGGTTG

                   *       
        458 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
        473 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
        488 ACTAGAAAACAA
          1 AC-AGAAAACAA

        500 AGCAAAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.