Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022157.1 Corchorus olitorius cultivar O-4 contig22190, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17464
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:6745 original size:43 final size:43

Alignment explanation


    Indices: 6683--6766  Score: 159
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       6673 TTTCCCTAAA

                                                       
       6683 GAAACGCCACAATTATCAATTCTGGAACATTAAAATGAGAAGG
          1 GAAACGCCACAATTATCAATTCTGGAACATTAAAATGAGAAGG

                          *                          
       6726 GAAACGCCACAATTCTCAATTCTGGAACATTAAAATGAGAA
          1 GAAACGCCACAATTATCAATTCTGGAACATTAAAATGAGAA

       6767 AATAAATTTC


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  43   40  1.00

ACGTcount: A:0.44, C:0.18, G:0.17, T:0.21


Consensus pattern (43 bp):   
GAAACGCCACAATTATCAATTCTGGAACATTAAAATGAGAAGG
Done.