Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022158.1 Corchorus olitorius cultivar O-4 contig22191, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8508
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:1450 original size:1 final size:1

Alignment explanation


    Indices: 1444--1469  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

       1434 AGGCTTCATC

                                      
       1444 AAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAA

       1470 GGCTTCATCA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:7841 original size:29 final size:30

Alignment explanation


    Indices: 7805--7863  Score: 84
    Period size: 31  Copynumber: 2.0  Consensus size: 30

       7795 ACTTAGGTTT

                        *                 
       7805 AAACCTTTTAT-TTCGTCCAATTTGGTACC
          1 AAACCTTTTATAATCGTCCAATTTGGTACC

                           *              
       7834 AAACCTTTTATAAATGGTCCAATTTGGTAC
          1 AAACCTTTTAT-AATCGTCCAATTTGGTAC

       7864 TTTTTTAGGT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  29   11  0.42
  31   15  0.58

ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39


Consensus pattern (30 bp):   
AAACCTTTTATAATCGTCCAATTTGGTACC
Done.